HL_5KCS_041

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUCGCG

Length

7 nucleotides

Bulged bases

5KCS|1|1A|U|1729, 5KCS|1|1A|C|1732

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_041 not in the Motif Atlas

Geometric match to HL_361D_002

Geometric discrepancy: 0.308

The information below is about HL_361D_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5KCS|1|1A|C|1727
5KCS|1|1A|C|1728
5KCS|1|1A|U|1729
5KCS|1|1A|C|1730
5KCS|1|1A|G|1731
5KCS|1|1A|C|1732
5KCS|1|1A|G|1733

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains