3D structure

PDB id
5KCS (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AGUUCAUAU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5KCS_058 not in the Motif Atlas
Homologous match to HL_4WF9_056
Geometric discrepancy: 0.1501
The information below is about HL_4WF9_056
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_52011.1
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
9

Unit IDs

5KCS|1|1A|A|2471
5KCS|1|1A|G|2472
5KCS|1|1A|U|2473
5KCS|1|1A|U|2474
5KCS|1|1A|C|2475
5KCS|1|1A|A|2476
5KCS|1|1A|U|2477
5KCS|1|1A|A|2478
5KCS|1|1A|U|2479

Current chains

Chain 1A
23S Ribosomal RNA

Nearby chains

Chain 19
50S ribosomal protein L36
Chain 1H
50S ribosomal protein L6
Chain 1Q
50S ribosomal protein L16
Chain 1w
Tetracycline resistance protein TetM from transposon Tn916

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