HL_5KCS_081

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5KCS|1|1a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1958

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KCS|1|1a|G|462
5KCS|1|1a|U|463
5KCS|1|1a|U|464
5KCS|1|1a|A|465
5KCS|1|1a|A|466
5KCS|1|1a|U|467
5KCS|1|1a|A|468
5KCS|1|1a|C|469
5KCS|1|1a|C|470

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains