HL_5KCS_099

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5KCS|1|1a|U|1451, 5KCS|1|1a|C|1452

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_099 not in the Motif Atlas

Homologous match to HL_5J7L_030

Geometric discrepancy: 0.5055

The information below is about HL_5J7L_030

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5KCS|1|1a|C|1449
5KCS|1|1a|U|1450
5KCS|1|1a|U|1451
5KCS|1|1a|C|1452
5KCS|1|1a|G|1453
5KCS|1|1a|G|1454

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains