HL_5KCS_124

3D structure

PDB id

5KCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Escherichia coli 70S ribosome in complex with antibiotic Evernimycin, mRNA, TetM and P-site tRNA at 3.9A resolution

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

5KCS|1|1a|C|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KCS_124 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.2345

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KCS|1|1a|A|320
5KCS|1|1a|A|321
5KCS|1|1a|C|322
5KCS|1|1a|U|323
5KCS|1|1a|G|324
5KCS|1|1a|A|325
5KCS|1|1a|G|326
5KCS|1|1a|A|327
5KCS|1|1a|C|328
5KCS|1|1a|A|329
5KCS|1|1a|C|330
5KCS|1|1a|G|331
5KCS|1|1a|G|332
5KCS|1|1a|U|333

Current chains

Chain 1a

16S Ribosomal RNA

Nearby chains

Chain 1p

30S ribosomal protein S16

Chain 1t

30S ribosomal protein S20