HL_5KPV_008

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1817

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPV|1|26|A|320
5KPV|1|26|A|321
5KPV|1|26|C|322
5KPV|1|26|U|323
5KPV|1|26|G|324
5KPV|1|26|A|325
5KPV|1|26|G|326
5KPV|1|26|A|327
5KPV|1|26|C|328
5KPV|1|26|A|329
5KPV|1|26|C|330
5KPV|1|26|G|331
5KPV|1|26|G|332
5KPV|1|26|U|333

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 24

30S ribosomal protein S20