HL_5KPV_011

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

5KPV|1|26|U|421

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_011 not in the Motif Atlas

Homologous match to HL_5J7L_011

Geometric discrepancy: 0.2376

The information below is about HL_5J7L_011

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

5KPV|1|26|C|419
5KPV|1|26|U|420
5KPV|1|26|U|421
5KPV|1|26|C|422
5KPV|1|26|G|423
5KPV|1|26|G|424

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 7

30S ribosomal protein S3

Chain 8

30S ribosomal protein S4