HL_5KPV_012

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5KPV|1|26|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2067

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPV|1|26|G|462
5KPV|1|26|U|463
5KPV|1|26|U|464
5KPV|1|26|A|465
5KPV|1|26|A|466
5KPV|1|26|U|467
5KPV|1|26|A|468
5KPV|1|26|C|469
5KPV|1|26|C|470

Current chains

Chain 26

16S ribosomal RNA

Nearby chains