HL_5KPV_029

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_029 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.1478

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5KPV|1|26|C|1314
5KPV|1|26|U|1315
5KPV|1|26|G|1316
5KPV|1|26|C|1317
5KPV|1|26|A|1318
5KPV|1|26|A|1319
5KPV|1|26|C|1320
5KPV|1|26|U|1321
5KPV|1|26|C|1322
5KPV|1|26|G|1323

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13

Chain 18

30S ribosomal protein S14

Chain 23

30S ribosomal protein S19