HL_5KPV_041

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5KPV|1|27|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_041 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.165

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5KPV|1|27|C|305
5KPV|1|27|U|306
5KPV|1|27|G|307
5KPV|1|27|G|308
5KPV|1|27|A|309
5KPV|1|27|A|310
5KPV|1|27|A|311
5KPV|1|27|G|312

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24