HL_5KPV_052

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_052 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.1357

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPV|1|27|G|712
5KPV|1|27|G|713
5KPV|1|27|U|714
5KPV|1|27|A|715
5KPV|1|27|A|716
5KPV|1|27|C|717
5KPV|1|27|A|718
5KPV|1|27|C|719

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 19

30S ribosomal protein S15

Chain 26

Small subunit ribosomal RNA; SSU rRNA