HL_5KPV_054

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5KPV|1|27|A|781, 5KPV|1|27|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_054 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3063

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPV|1|27|U|779
5KPV|1|27|G|780
5KPV|1|27|A|781
5KPV|1|27|A|782
5KPV|1|27|A|783
5KPV|1|27|G|784
5KPV|1|27|G|785

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2