HL_5KPV_066

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5KPV|1|27|U|1396, 5KPV|1|27|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_066 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.1603

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5KPV|1|27|G|1389
5KPV|1|27|U|1390
5KPV|1|27|U|1391
5KPV|1|27|A|1392
5KPV|1|27|A|1393
5KPV|1|27|U|1394
5KPV|1|27|A|1395
5KPV|1|27|U|1396
5KPV|1|27|U|1397
5KPV|1|27|C|1398

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23