HL_5KPV_086

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_086 not in the Motif Atlas

Homologous match to HL_7RQB_055

Geometric discrepancy: 0.1534

The information below is about HL_7RQB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.3

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPV|1|27|G|2303
5KPV|1|27|G|2304
5KPV|1|27|U|2305
5KPV|1|27|C|2306
5KPV|1|27|G|2307
5KPV|1|27|G|2308
5KPV|1|27|A|2309
5KPV|1|27|C|2310
5KPV|1|27|A|2311
5KPV|1|27|U|2312
5KPV|1|27|C|2313

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L5