HL_5KPV_097

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5KPV|1|27|G|2751, 5KPV|1|27|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_097 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1286

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5KPV|1|27|C|2745
5KPV|1|27|U|2746
5KPV|1|27|G|2747
5KPV|1|27|A|2748
5KPV|1|27|A|2749
5KPV|1|27|A|2750
5KPV|1|27|G|2751
5KPV|1|27|C|2752
5KPV|1|27|A|2753
5KPV|1|27|U|2754
5KPV|1|27|C|2755
5KPV|1|27|U|2756
5KPV|1|27|A|2757
5KPV|1|27|A|2758
5KPV|1|27|G|2759

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain E

50S ribosomal protein L6