HL_5KPV_099

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

5KPV|1|27|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_099 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1209

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KPV|1|27|G|2819
5KPV|1|27|A|2820
5KPV|1|27|A|2821
5KPV|1|27|G|2822
5KPV|1|27|A|2823
5KPV|1|27|C|2824
5KPV|1|27|G|2825
5KPV|1|27|A|2826
5KPV|1|27|C|2827

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain M

50S ribosomal protein L17