HL_5KPV_111
3D structure
- PDB id
- 5KPV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.1 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPV_111 not in the Motif Atlas
- Homologous match to HL_4RDX_003
- Geometric discrepancy: 0.178
- The information below is about HL_4RDX_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
5KPV|1|32|G|53
5KPV|1|32|U|54
5KPV|1|32|U|55
5KPV|1|32|C|56
5KPV|1|32|A|57
5KPV|1|32|A|58
5KPV|1|32|A|59
5KPV|1|32|U|60
5KPV|1|32|C|61
Current chains
- Chain 32
- E-site tRNAfMet
Nearby chains
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: