HL_5KPV_114

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

5KPV|1|27|A|1453, 5KPV|1|27|C|1454, 5KPV|1|27|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_114 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.3237

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPV|1|27|G|1450
5KPV|1|27|C|1451
5KPV|1|27|G|1452
5KPV|1|27|A|1453
5KPV|1|27|C|1454
5KPV|1|27|G|1455
5KPV|1|27|G|1456
5KPV|1|27|U|1457
5KPV|1|27|U|1458
5KPV|1|27|G|1459
5KPV|1|27|U|1460
5KPV|1|27|C|1461

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L17