HL_5KPV_115

3D structure

PDB id

5KPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.1 Å

Loop

Sequence

AUUGAAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPV_115 not in the Motif Atlas

Homologous match to HL_5E81_235

Geometric discrepancy: 0.2301

The information below is about HL_5E81_235

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

5KPV|1|30|A|31
5KPV|1|30|U|32
5KPV|1|30|U|33
5KPV|1|30|G|34
5KPV|1|30|A|35
5KPV|1|30|A|36
5KPV|1|30|A|37
5KPV|1|30|A|38
5KPV|1|30|U|39

Current chains

Chain 30

A-site tRNAPhe

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain 27

Large subunit ribosomal RNA; LSU rRNA

Chain 29

mRNA