HL_5KPW_001
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUGAUCAUGG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPW_001 not in the Motif Atlas
- Homologous match to HL_5J7L_001
- Geometric discrepancy: 0.1358
- The information below is about HL_5J7L_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89881.5
- Basepair signature
- cWW-tHW-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5KPW|1|26|U|12
5KPW|1|26|U|13
5KPW|1|26|U|14
5KPW|1|26|G|15
5KPW|1|26|A|16
5KPW|1|26|U|17
5KPW|1|26|C|18
5KPW|1|26|A|19
5KPW|1|26|U|20
5KPW|1|26|G|21
5KPW|1|26|G|22
Current chains
- Chain 26
- 16S ribosomal RNA
Nearby chains
- Chain 16
- 30S ribosomal protein S12
- Chain 9
- 30S ribosomal protein S5
Coloring options: