HL_5KPW_007

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_007 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.095

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5KPW|1|26|U|296
5KPW|1|26|G|297
5KPW|1|26|A|298
5KPW|1|26|G|299
5KPW|1|26|A|300
5KPW|1|26|G|301

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 16

30S ribosomal protein S12

Chain 21

30S ribosomal protein S17

Chain 8

30S ribosomal protein S4

Chain 9

30S ribosomal protein S5