HL_5KPW_008

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1577

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPW|1|26|A|320
5KPW|1|26|A|321
5KPW|1|26|C|322
5KPW|1|26|U|323
5KPW|1|26|G|324
5KPW|1|26|A|325
5KPW|1|26|G|326
5KPW|1|26|A|327
5KPW|1|26|C|328
5KPW|1|26|A|329
5KPW|1|26|C|330
5KPW|1|26|G|331
5KPW|1|26|G|332
5KPW|1|26|U|333

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 24

30S ribosomal protein S20