HL_5KPW_012

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

5KPW|1|26|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.2138

The information below is about HL_5J7L_012

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPW|1|26|G|462
5KPW|1|26|U|463
5KPW|1|26|U|464
5KPW|1|26|A|465
5KPW|1|26|A|466
5KPW|1|26|U|467
5KPW|1|26|A|468
5KPW|1|26|C|469
5KPW|1|26|C|470

Current chains

Chain 26

16S ribosomal RNA

Nearby chains