HL_5KPW_026

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAUAAA

Length

7 nucleotides

Bulged bases

5KPW|1|26|U|1168

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_026 not in the Motif Atlas

Homologous match to HL_4LFB_027

Geometric discrepancy: 0.2036

The information below is about HL_4LFB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5KPW|1|26|U|1165
5KPW|1|26|G|1166
5KPW|1|26|A|1167
5KPW|1|26|U|1168
5KPW|1|26|A|1169
5KPW|1|26|A|1170
5KPW|1|26|A|1171

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 25

30S ribosomal protein S21

Chain 6

30S ribosomal protein S2