HL_5KPW_040

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5KPW|1|27|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_040 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1611

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5KPW|1|27|C|305
5KPW|1|27|U|306
5KPW|1|27|G|307
5KPW|1|27|G|308
5KPW|1|27|A|309
5KPW|1|27|A|310
5KPW|1|27|A|311
5KPW|1|27|G|312

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24