HL_5KPW_043

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5KPW|1|27|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_043 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0971

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPW|1|27|G|410
5KPW|1|27|G|411
5KPW|1|27|A|412
5KPW|1|27|C|413
5KPW|1|27|C|414
5KPW|1|27|A|415
5KPW|1|27|U|416
5KPW|1|27|C|417

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L15