HL_5KPW_047
3D structure
- PDB id
- 5KPW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UUUUGUAUAA
- Length
- 10 nucleotides
- Bulged bases
- 5KPW|1|27|A|574
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPW_047 not in the Motif Atlas
- Geometric match to HL_5J7L_150
- Geometric discrepancy: 0.1293
- The information below is about HL_5J7L_150
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.8
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 140
Unit IDs
5KPW|1|27|U|566
5KPW|1|27|U|567
5KPW|1|27|U|568
5KPW|1|27|U|569
5KPW|1|27|G|570
5KPW|1|27|U|571
5KPW|1|27|A|572
5KPW|1|27|U|573
5KPW|1|27|A|574
5KPW|1|27|A|575
Current chains
- Chain 27
- 23S ribosomal RNA
Nearby chains
- Chain 1
- 50S ribosomal protein L32
- Chain B
- 50S ribosomal protein L3
- Chain K
- 50S ribosomal protein L15
- Chain P
- 50S ribosomal protein L20
- Chain Q
- 50S ribosomal protein L21
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