HL_5KPW_053

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5KPW|1|27|A|781, 5KPW|1|27|G|784

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_053 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.3135

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5KPW|1|27|U|779
5KPW|1|27|G|780
5KPW|1|27|A|781
5KPW|1|27|A|782
5KPW|1|27|A|783
5KPW|1|27|G|784
5KPW|1|27|G|785

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2