HL_5KPW_055

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_055 not in the Motif Atlas

Geometric match to HL_4LX6_002

Geometric discrepancy: 0.3779

The information below is about HL_4LX6_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

5KPW|1|27|C|885
5KPW|1|27|A|886
5KPW|1|27|U|887
5KPW|1|27|C|888
5KPW|1|27|C|889
5KPW|1|27|C|890
5KPW|1|27|G|891

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 17

30S ribosomal protein S13

Chain 33

GTP pyrophosphokinase