HL_5KPW_058

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

5KPW|1|27|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_058 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.4234

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

5KPW|1|27|C|1064
5KPW|1|27|U|1065
5KPW|1|27|U|1066
5KPW|1|27|A|1067
5KPW|1|27|G|1068
5KPW|1|27|A|1069
5KPW|1|27|A|1070
5KPW|1|27|G|1071
5KPW|1|27|C|1072
5KPW|1|27|A|1073
5KPW|1|27|G|1074

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 30

Transfer RNA; tRNA

Chain 33

GTP pyrophosphokinase

Chain H

50S ribosomal protein L11