HL_5KPW_083

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5KPW|1|27|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_083 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1241

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5KPW|1|27|C|2248
5KPW|1|27|U|2249
5KPW|1|27|G|2250
5KPW|1|27|G|2251
5KPW|1|27|G|2252
5KPW|1|27|G|2253
5KPW|1|27|C|2254
5KPW|1|27|G|2255
5KPW|1|27|G|2256

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 31

Transfer RNA; tRNA

Chain L

50S ribosomal protein L16

Chain V

50S ribosomal protein L27