HL_5KPW_088

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_088 not in the Motif Atlas

Homologous match to HL_4WF9_054

Geometric discrepancy: 0.1495

The information below is about HL_4WF9_054

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5KPW|1|27|C|2374
5KPW|1|27|G|2375
5KPW|1|27|A|2376
5KPW|1|27|A|2377
5KPW|1|27|A|2378
5KPW|1|27|G|2379

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L33

Chain N

50S ribosomal protein L18

Chain V

50S ribosomal protein L27