HL_5KPW_094

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_094 not in the Motif Atlas

Geometric match to HL_5Y7M_002

Geometric discrepancy: 0.1364

The information below is about HL_5Y7M_002

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.7

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

349

Unit IDs

5KPW|1|27|C|2658
5KPW|1|27|G|2659
5KPW|1|27|A|2660
5KPW|1|27|G|2661
5KPW|1|27|A|2662
5KPW|1|27|G|2663

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 30

Transfer RNA; tRNA

Chain E

50S ribosomal protein L6