HL_5KPW_096

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

5KPW|1|27|G|2751, 5KPW|1|27|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPW_096 not in the Motif Atlas

Homologous match to HL_4WF9_062

Geometric discrepancy: 0.1092

The information below is about HL_4WF9_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

5KPW|1|27|C|2745
5KPW|1|27|U|2746
5KPW|1|27|G|2747
5KPW|1|27|A|2748
5KPW|1|27|A|2749
5KPW|1|27|A|2750
5KPW|1|27|G|2751
5KPW|1|27|C|2752
5KPW|1|27|A|2753
5KPW|1|27|U|2754
5KPW|1|27|C|2755
5KPW|1|27|U|2756
5KPW|1|27|A|2757
5KPW|1|27|A|2758
5KPW|1|27|G|2759

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 5

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain I

50S ribosomal protein L13