HL_5KPW_116

3D structure

PDB id

5KPW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGGGAGGCUUUGAAGUGUGGACGCCAGUCUGCAUGGAGCCGACCUUGAAAUACCAC

Length

57 nucleotides

Bulged bases

5KPW|1|27|A|2126, 5KPW|1|27|U|2132, 5KPW|1|27|C|2145, 5KPW|1|27|C|2146, 5KPW|1|27|A|2171, 5KPW|1|27|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPW|1|27|G|2121
5KPW|1|27|U|2122
5KPW|1|27|G|2123
5KPW|1|27|G|2124
5KPW|1|27|G|2125
5KPW|1|27|A|2126
5KPW|1|27|G|2127
5KPW|1|27|G|2128
5KPW|1|27|C|2129
5KPW|1|27|U|2130
5KPW|1|27|U|2131
5KPW|1|27|U|2132
5KPW|1|27|G|2133
5KPW|1|27|A|2134
5KPW|1|27|A|2135
5KPW|1|27|G|2136
5KPW|1|27|U|2137
5KPW|1|27|G|2138
5KPW|1|27|U|2139
5KPW|1|27|G|2140
5KPW|1|27|G|2141
5KPW|1|27|A|2142
5KPW|1|27|C|2143
5KPW|1|27|G|2144
5KPW|1|27|C|2145
5KPW|1|27|C|2146
5KPW|1|27|A|2147
5KPW|1|27|G|2148
5KPW|1|27|U|2149
5KPW|1|27|C|2150
5KPW|1|27|U|2151
5KPW|1|27|G|2152
5KPW|1|27|C|2153
5KPW|1|27|A|2154
5KPW|1|27|U|2155
5KPW|1|27|G|2156
5KPW|1|27|G|2157
5KPW|1|27|A|2158
5KPW|1|27|G|2159
5KPW|1|27|C|2160
5KPW|1|27|C|2161
5KPW|1|27|G|2162
5KPW|1|27|A|2163
5KPW|1|27|C|2164
5KPW|1|27|C|2165
5KPW|1|27|U|2166
5KPW|1|27|U|2167
5KPW|1|27|G|2168
5KPW|1|27|A|2169
5KPW|1|27|A|2170
5KPW|1|27|A|2171
5KPW|1|27|U|2172
5KPW|1|27|A|2173
5KPW|1|27|C|2174
5KPW|1|27|C|2175
5KPW|1|27|A|2176
5KPW|1|27|C|2177

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 15

30S ribosomal protein S11

Chain 32

Transfer RNA; tRNA