HL_5KPX_008

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1611

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

5KPX|1|26|A|320
5KPX|1|26|A|321
5KPX|1|26|C|322
5KPX|1|26|U|323
5KPX|1|26|G|324
5KPX|1|26|A|325
5KPX|1|26|G|326
5KPX|1|26|A|327
5KPX|1|26|C|328
5KPX|1|26|A|329
5KPX|1|26|C|330
5KPX|1|26|G|331
5KPX|1|26|G|332
5KPX|1|26|U|333

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 24

30S ribosomal protein S20