HL_5KPX_012

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_012 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.316

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPX|1|26|G|462
5KPX|1|26|U|463
5KPX|1|26|U|464
5KPX|1|26|A|465
5KPX|1|26|A|466
5KPX|1|26|U|467
5KPX|1|26|A|468
5KPX|1|26|C|469
5KPX|1|26|C|470

Current chains

Chain 26

16S ribosomal RNA

Nearby chains