HL_5KPX_014

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUCAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_014 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1213

The information below is about HL_4LFB_014

Detailed Annotation

GNRA-like with tWH

Broad Annotation

GNRA

Motif group

HL_86621.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5KPX|1|26|G|617
5KPX|1|26|C|618
5KPX|1|26|U|619
5KPX|1|26|C|620
5KPX|1|26|A|621
5KPX|1|26|A|622
5KPX|1|26|C|623

Current chains

Chain 26

16S ribosomal RNA

Nearby chains

Chain 20

30S ribosomal protein S16

Chain 8

30S ribosomal protein S4