HL_5KPX_035

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_035 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.369

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

5KPX|1|27|G|136
5KPX|1|27|U|137
5KPX|1|27|U|138
5KPX|1|27|U|139
5KPX|1|27|C|140
5KPX|1|27|G|141
5KPX|1|27|A|142
5KPX|1|27|C|143

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23