HL_5KPX_040

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5KPX|1|27|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_040 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1191

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5KPX|1|27|C|305
5KPX|1|27|U|306
5KPX|1|27|G|307
5KPX|1|27|G|308
5KPX|1|27|A|309
5KPX|1|27|A|310
5KPX|1|27|A|311
5KPX|1|27|G|312

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L24