HL_5KPX_041

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

5KPX|1|27|G|329, 5KPX|1|27|A|330, 5KPX|1|27|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_041 not in the Motif Atlas

Homologous match to HL_4WF9_012

Geometric discrepancy: 0.133

The information below is about HL_4WF9_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.3

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

15

Unit IDs

5KPX|1|27|G|327
5KPX|1|27|U|328
5KPX|1|27|G|329
5KPX|1|27|A|330
5KPX|1|27|C|331
5KPX|1|27|A|332
5KPX|1|27|G|333
5KPX|1|27|C|334
5KPX|1|27|C|335

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain T

50S ribosomal protein L24