HL_5KPX_053

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

5KPX|1|27|A|781

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_053 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3185

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

5KPX|1|27|U|779
5KPX|1|27|G|780
5KPX|1|27|A|781
5KPX|1|27|A|782
5KPX|1|27|A|783
5KPX|1|27|G|784
5KPX|1|27|G|785

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain A

50S ribosomal protein L2