HL_5KPX_065

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

5KPX|1|27|U|1396, 5KPX|1|27|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_065 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1435

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

5KPX|1|27|G|1389
5KPX|1|27|U|1390
5KPX|1|27|U|1391
5KPX|1|27|A|1392
5KPX|1|27|A|1393
5KPX|1|27|U|1394
5KPX|1|27|A|1395
5KPX|1|27|U|1396
5KPX|1|27|U|1397
5KPX|1|27|C|1398

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L23