HL_5KPX_079

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5KPX|1|27|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_079 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1032

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

5KPX|1|27|G|1949
5KPX|1|27|G|1950
5KPX|1|27|U|1951
5KPX|1|27|A|1952
5KPX|1|27|A|1953
5KPX|1|27|G|1954
5KPX|1|27|U|1955
5KPX|1|27|U|1956
5KPX|1|27|C|1957

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 26

Small subunit ribosomal RNA; SSU rRNA

Chain J

50S ribosomal protein L14