HL_5KPX_080

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5KPX|1|27|A|2030, 5KPX|1|27|A|2031, 5KPX|1|27|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_080 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1396

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5KPX|1|27|G|2027
5KPX|1|27|U|2028
5KPX|1|27|G|2029
5KPX|1|27|A|2030
5KPX|1|27|A|2031
5KPX|1|27|G|2032
5KPX|1|27|A|2033
5KPX|1|27|U|2034
5KPX|1|27|G|2035
5KPX|1|27|C|2036

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain B

50S ribosomal protein L3

Chain Q

50S ribosomal protein L21