HL_5KPX_094

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_094 not in the Motif Atlas

Geometric match to HL_7A0S_063

Geometric discrepancy: 0.121

The information below is about HL_7A0S_063

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5KPX|1|27|C|2658
5KPX|1|27|G|2659
5KPX|1|27|A|2660
5KPX|1|27|G|2661
5KPX|1|27|A|2662
5KPX|1|27|G|2663

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain 30

Transfer RNA; tRNA

Chain E

50S ribosomal protein L6