HL_5KPX_097

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

5KPX|1|27|U|2797, 5KPX|1|27|A|2800

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_097 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.5481

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

5KPX|1|27|C|2795
5KPX|1|27|U|2796
5KPX|1|27|U|2797
5KPX|1|27|U|2798
5KPX|1|27|A|2799
5KPX|1|27|A|2800
5KPX|1|27|G|2801

Current chains

Chain 27

23S ribosomal RNA

Nearby chains

Chain I

50S ribosomal protein L13