HL_5KPX_103
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- AUUGAAAAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPX_103 not in the Motif Atlas
- Homologous match to HL_3TUP_002
- Geometric discrepancy: 0.1526
- The information below is about HL_3TUP_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
5KPX|1|30|A|31
5KPX|1|30|U|32
5KPX|1|30|U|33
5KPX|1|30|G|34
5KPX|1|30|A|35
5KPX|1|30|A|36
5KPX|1|30|A|37
5KPX|1|30|A|38
5KPX|1|30|U|39
Current chains
- Chain 30
- A-site tRNAPhe
Nearby chains
- Chain 16
- 30S ribosomal protein S12
- Chain 26
- Small subunit ribosomal RNA; SSU rRNA
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain 29
- mRNA
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