HL_5KPX_104

3D structure

PDB id

5KPX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUCGAUUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5KPX_104 not in the Motif Atlas

Homologous match to HL_5J8B_107

Geometric discrepancy: 0.5633

The information below is about HL_5J8B_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5KPX|1|30|G|53
5KPX|1|30|U|54
5KPX|1|30|U|55
5KPX|1|30|C|56
5KPX|1|30|G|57
5KPX|1|30|A|58
5KPX|1|30|U|59
5KPX|1|30|U|60
5KPX|1|30|C|61

Current chains

Chain 30

A-site tRNAPhe

Nearby chains

Chain 27

Large subunit ribosomal RNA; LSU rRNA

Chain H

50S ribosomal protein L11