HL_5KPX_114
3D structure
- PDB id
- 5KPX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of RelA bound to ribosome in presence of A/R tRNA (Structure IV)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 5KPX|1|28|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5KPX_114 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.1719
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5KPX|1|28|A|34
5KPX|1|28|C|35
5KPX|1|28|C|36
5KPX|1|28|C|37
5KPX|1|28|C|38
5KPX|1|28|A|39
5KPX|1|28|U|40
5KPX|1|28|G|41
5KPX|1|28|C|42
5KPX|1|28|C|43
5KPX|1|28|G|44
5KPX|1|28|A|45
5KPX|1|28|A|46
5KPX|1|28|C|47
5KPX|1|28|U|48
Current chains
- Chain 28
- 5S ribosomal RNA
Nearby chains
- Chain 27
- Large subunit ribosomal RNA; LSU rRNA
- Chain D
- 50S ribosomal protein L5
- Chain N
- 50S ribosomal protein L18
- Chain Z
- 50S ribosomal protein L31
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